This application scores proteins using the bcl protein scoring function. The input is a single pdb (-pdb) or a file containing a list of pdb files (-pdblist). THe output is a Table that has scores (column) for each given pdb file. In addition a quality measure for for the protein models can be derived relative to a given (usually a native) protein structure.The enrichment for a quality measure and the rank can be calculated as well. The weight set for a linear consensus score can also be defined. In addition diverse flags for the input pdbs can change, how the pdb is read in. Membrane scores can be enabled with -pdbtm_xml given files containing a corresponding pdbtm_xml file list or the -membrane flag.






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Windows x86 (32-bit) Linux x86_64 (64-bit)
CentOS 5+ / RedHat 5+
Mac OS X 10.4 or greater
bcl-3.4.0-Windows-x86.exe bcl-3.4.0-Linux-x86_64.sh bcl-3.4.0.dmg
To run bcl applications, academic users need a license from our license server
Commercial users need to contact us at bcl-commercial-support@meilerlab.org for licensing and pricing information