BCL::PDBCompare is a C++ based application, created by Vanderbilt University's Meiler Laboratory, which is part of a larger library of applications called BCL::Commons.  BCL::PDBCompare is a utility for calculating the structural differences between protein models. A variety of comparison algorithms are available such as RMSD.

Running BCL::PDBCompare consists of two main steps.

1) Get at least two protein structures in PDB format.

2) Run BCL::PDBCompare to calculate any number of comparisons between the models

At a command prompt, navigate to the location of your BCL::PDBCompare executable program.


Information concerning syntax and flags can be obtained by typing bcl.exe PDBCompare -help

For more general information about the product, type bcl.exe PDBCompare -readme

Download the BCL to get this and many other applications
Windows x86 (32-bit) Linux x86_64 (64-bit)
CentOS 5+ / RedHat 5+
Mac OS X 10.4 or greater
bcl-3.4.0-Windows-x86.exe bcl-3.4.0-Linux-x86_64.sh bcl-3.4.0.dmg
To run bcl applications, academic users need a license from our license server
Commercial users need to contact us at bcl-commercial-support@meilerlab.org for licensing and pricing information