This server offers a protein secondary structure prediction from its primary sequence and a three dimensional model. An neural network was trained with low resolution tertiary structure, an amino acid property profile, and the position based scoring matrix of a blast run (as used by David Jones, J. Biol. Mol., 1999, 292(2) 195-202). It achieves a three state prediction accuracy between 75% and 95% depending on the quality of the structural model.
We experienced technical difficulties from March 30 2016 - April 5th, 2016, following a fire in the Vanderbilt campus data center.
If you submitted a job during this time window, please resubmit because the data from the job was lost. We apologize for the inconvenience