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Mert Karakas

Former Graduate Student

PhD Vanderbilt University
mert.karakas [ at ] vanderbilt.edu

Research Interests:

  • Research Projects
  • Publications
Karakas, M.;Woetzel, N.; Meiler, J.
BCL::contact-low confidence fold recognition hits boost protein contact prediction and de novo structure determination (2010) J. Comput. Biol.

Lindert, S.;Staritzbichler, R.; Woetzel, N.; Karakas, M.; Stewart, P. L.; Meiler, J.
EM-fold: De novo folding of alpha-helical proteins guided by intermediate-resolution electron microscopy density maps (2009) Structure

Steffen Lindert;Tommy Hofman, Nils Woetzel, Mert Karakas, Phoebe L. Stewart, Jens Meiler
Ab initio protein modeling into cryoEM density maps using EM-Fold (2012) Biopolymers

Steffen Lindert;Nathan Alexander, Nils Woetzel, Mert Karakas, Phoebe L. Stewart, Jens Meiler
EM-Fold: De Novo Atomic-Detail Protein Structure Determination from Medium-Resolution Density Maps (2012) Structure

Nils Woetzel;Mert KarakaS, Rene Staritzbichler, Ralf Mueller, Brian E. Weiner, Jens Meiler
BCL::Score-Knowledge Based Energy Potentials for Ranking Protein Models Represented by Idealized Secondary Structure Elements (2012) PLOS One

Mert Karakas;Nils Woetzel, Rene Staritzbichler, Nathan Alexander, Brian E. Weiner, Jens Meiler
BCL::Fold - De Novo Prediction of Complex and Large Protein Topologies by Assembly of Secondary Structure Elements (2012) PLOS One

Julia Koehler Leman;Ralf Mueller, Mert Karakas, Nils Woetzel, Jens Meiler
Simultaneous prediction of protein secondary structure and transmembrane spans (2013) Proteins

Brian E. Weiner;Nils Woetzel, Mert Karakas, Nathan Alexander, Jens Meiler
BCL::MP-Fold: Folding Membrane Proteins through Assembly of Transmembrane Helices (2013) Structure

Brian E. Weiner;Nathan Alexander, Louesa R. Akin, Nils Woetzel, Mert Karakas, and Jens Meiler
BCL::Fold protein topology determination from limited NMR restraints (2013) Proteins