TIM Barrel Design

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Six of the ten most frequent protein topologies have symmetry on the fold level. We postulate that the evolutionary origin of these symmetric superfolds lies in naturally occurring homo-oligomeric protein complexes that undergo gene duplication and fusion. To test this hypothesis the Rosetta protein design package was used to computationally design a two-fold symmetric variant of imidazole glycerol phosphate synthase (HisF). The new protein, termed FLR, adopts the symmetric βα TIM-barrel superfold. The experimental structure of FLR exhibits two-fold symmetry on the sequence and structural level. When cut in half, FLR dimerizes readily to adopt the same fold. FLR thereby mimics a hypothetical, ancestral symmetric gene-fused monomer of HisF. Design of symmetric proteins requires reduced computational resources and thereby presents an attractive strategy for the construction of larger proteins.

 

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Current Project Members: Amanda Duran
Alumni Project Members: Carie Fortenberry , Will Proffitt , Ethan Evans , Joel Harp , Beth Repasky , Brent Dorr